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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BLCA cis rs71327718 1 rs71327718 chr3:125592857 LOC100125556 chr3:125635444-125648865:+ 0.31 3.84 0.000146 Metabolite levels (HVA/5-HIAA ratio)
BLCA cis rs4663866 1 rs71426510 chr2:239178909 LOC151174 chr2:239133754-239140318:- 0.46 4.51 8.67E-6 Irritable bowel syndrome
BLCA cis rs11622475 1 rs7143682 chr14:104413455 TDRD9 chr14:104394817-104519002:+ 0.34 5.4 1.15E-7 Bipolar disorder
BLCA cis rs2143950 1 rs7144423 chr14:35572547 PPP2R3C chr14:35554679-35591679:- 0.28 4.25 2.73E-5 Atopic dermatitis
BLCA cis rs2239557 1 rs7153160 chr14:74509377 LIN52 chr14:74551656-74667117:+ 0.34 7.89 3.14E-14 Common traits (Other)
BLCA cis rs2239557 1 rs7153587 chr14:74509660 LIN52 chr14:74551656-74667117:+ 0.35 8.03 1.23E-14 Common traits (Other)
BLCA cis rs2143950 1 rs7154306 chr14:35540499 PPP2R3C chr14:35554679-35591679:- 0.25 3.85 0.000138 Atopic dermatitis
BLCA cis rs9475752 1 rs71550519 chr6:56780272 BEND6 chr6:56819773-56892138:+ -0.31 -4.31 2.05E-5 Menarche (age at onset)
BLCA cis rs4141404 1 rs715510 chr22:31690528 C22orf30 chr22:32072242-32146120:- -0.2 -3.83 0.000151 Paclitaxel-induced neuropathy
BLCA cis rs2143950 1 rs7156322 chr14:35544330 PPP2R3C chr14:35554679-35591679:- 0.26 3.99 8.01E-5 Atopic dermatitis
BLCA cis rs13438327 1 rs71563547 chr7:97615831 MGC72080 chr7:97503667-97601638:- 0.44 3.96 9.03E-5 Sudden cardiac arrest
BLCA cis rs9475752 1 rs71564866 chr6:56771207 BEND6 chr6:56819773-56892138:+ -0.31 -4.28 2.36E-5 Menarche (age at onset)
BLCA cis rs9475752 1 rs71564868 chr6:56798441 BEND6 chr6:56819773-56892138:+ -0.29 -4.01 7.16E-5 Menarche (age at onset)
BLCA cis rs2239557 1 rs7157566 chr14:74649129 LIN52 chr14:74551656-74667117:+ -0.34 -8.11 7.02E-15 Common traits (Other)
BLCA cis rs11158609 1 rs7157595 chr14:24696238 TGM1 chr14:24718322-24732416:- 0.29 3.93 0.000103 Systolic blood pressure (cigarette smoking interaction)